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This is the main site of the Bioinformatics, Natural Calculus and Systems Biology of the Department of Informatics, Systems and Communications of the University of Milan - Bicocca, i.e., BIoinformatics MIlan Bicocca (BIMIB). Here you can find descriptions of the group's current and past projects, software, and references to our publications. Please use the menu on the side to navigate the site.

Giancarlo Mauri, BIMIB director. Marco Antoniotti, BIMIB fac-quasi-totum.

News

• Wivace 2013 website is online: http://wivace2013.disco.unimib.it/
  
  

Past Events

• Computational challenges in the analysis of high-throughput (epi)genomics sequencing data

Mattia Pelizzola, IIT, Milan Italy

Wednesday, May 29th 2013, h 15:00, Sala Seminari, I Floor, DISCo Università degli Studi di Milano Bicocca, Milan, ITALY

• Identificare cosa? Le entità biologiche nell'era della Next Generation Sequencing

Maurizio Casiraghi, Dept. of Biotechnologies and Biosciences, Università degli Studi di Milano Bicocca, Italy

Wednesday, April 24th 2013, h 11:00, Sala Seminari, I Floor, DISCo Università degli Studi di Milano Bicocca, Milan, ITALY

• Sox2 molecular targets in brain development and neural stem cells: from in vivo studies in mutant mice to genomic approaches

Silvia Nicolis, Dept. of Biotechnologies and Biosciences, Università degli Studi di Milano Bicocca, Italy

Wednesday, January 23rd 2013, h 11:00, Sala Seminari, I Floor, DISCo Università degli Studi di Milano Bicocca, Milan, ITALY

• Mutation Profiles Reveal the Proliferation Dynamics of Colorectal Adenomas

Francesca Ciccarelli, PhD, Evolutionary Genomics of Cancer, European Institute of Oncology, Milan, ITALY

Wednesday, September 26th, 2012, h 11:00, Sala Seminari, I Floor, DISCo Università degli Studi di Milano Bicocca, Milan, ITALY

• NGS Milano Meeting

time and location: Tuesday July 17th, 2012, 14:30-18:30, Sala Seminari, I Floor, U14, DISCo Università degli Studi di Milano Bicocca, Milan, ITALY

• Seminar: A stochastic model of the emergence of autocatalytic sets

Alex Graudenzi, PhD, DISCo Università degli Studi di Milano Bicocca, Milan, ITALY

Thursday, June 7th, 2012, h 11:00, Sala Seminari, I Floor, DISCo Università degli Studi di Milano Bicocca, Milan, ITALY

• UNIMIB Joint Informatics, Biology, Medicine Short Doctoral Course

Gary Bader, PhD, CCBR, University of Toronto

location: Aula U2/8, Edificio U2, Piazzale della Scienza, Università degli Studi di Milano Bicocca, Milan, ITALY

• Seminar: Fuzzy Tandem Repeats in DNA and Protein Sequences - algorithms and applications

Marco Pellegrini, Senior Researcher, IIT, C.N.R., Pisa, Italy

Tuesday, April 24th, 2012

• Seminar: Approcci integrativi per identificare trascritti coinvolti nella progressione del carcinoma del colon-retto

Manuela Gariboldi, PhD, IFOM-IEO, Milan, Italy

Wednesday, January 25th, 2012

• Seminar: The Theorist's guide to the escape of tumors from immune control

Alberto d'Onofrio, PhD, Dept. of Experimental Oncology European Institute of Oncology, Milan, Italy

Wednesday, November 30th, 2011

• Seminar: Hybrid Systems Models for Tumor-Immunse System Interplay

Giulio Caravagna, Dept. of Informatics, Systems and Communication, Università degli Studi di Milano Bicocca, Italy

Wednesday, October 26th, 2011

• Seminar: Properties of membrane systems

Artiom Alhazov, Dept. of Informatics, Systems and Communication, Università degli Studi di Milano Bicocca, Italy

Wednesday, September 28th, 2011

• Seminar: Set cover algorithms for very large datasets

Tony Wirth, Department of Computer Science and Software Engineering, University of Melbourne, Australia

Wednesday, July 27th, 2011

• Seminar: Gene-set association analysis of rare copy number variants in autism spectrum disorder and schizophrenia

Daniele Merico, Bader Lab & Emili Lab Donnelly CCBR, University of Toronto, Canada

Wednesday, July 13th, 2011

• Seminar: Systems biology for cell signaling. Data-based mathematical modeling of VEGF signaling in quiescent and angiogenic endothelium as an example

Lucia Napione, Laboratory of Vascular Oncology, Institute for Cancer Research and Treatment – Candiolo (Torino), Dep. Oncological Sciences – University of Torino

Thursday, July 7th, 2011

• Seminar: From cellular to molecular Growth & Cycle models

Marco Vanoni, Dept. of Biotechnologies and Biosciences, Università degli Studi di Milano Bicocca, Italy

Wednesday, May 25, 2011

• Seminar: Algorithmic models for DNA processes

Giuditta Franco, Department of Computer Science, University of Verona, Italy

Wednesday, May 25, 2011

• Seminar: An overview of modelling of intestinal crypt dynamics with references to colon-rectal cancer (CRC)

Marco Antoniotti and Giovanni De Matteis, BIMIB, Dept. of Informatics, Systems and Communication, Università degli Studi di Milano Bicocca, Italy

Wednesday, March 30, 2011

• Seminar: Motif Discovery from Chips to ChIPs

Dr. Giulio Pavesi, Bioinformatics, Evolution and Comparative Genomics Lab, Dept. of Biomolecular Science and Biotechnology, Università degli Studi di Milano, Italy

Wednesday, February 2, 2011

• A dynamical model of genetic networks describes cell differentiation

Prof. Roberto Serra, Deparment of Social, Cognitive and Quantitative Sciences, Università degli Studi di Modena and Reggio Emilia, Italy

Friday, November 26, 2010

• Seminar: Algorithms for Sequence Finding and Selection Problems

Prof. D.T. Lee, Institute of Information Science & Research Center for IT Innovation, Academia Sinica, Taiwan

Fellow of IEEE, Fellow of ACM, Member of Academia Sinica, Member of Academy of Sciences for the Developing World

Thursday, October 7, 2010

• Seminar: Next-Generation Sequencing: Challenges in Bioinformatics

Dr. Raffaella Rizzi, DISCo, University of Milano-Bicocca, Italy

Wednesday July 7, 2010

• Seminar: Analisi statistica e bioinformatica di genomi animali

Dr. Alessandra Stella, CeRSA, Parco Tecnologico Padano, Lodi, Italy

Tuesday July 6, 2010

• 2010-05-27 Seminar: Automation of bioinformatics data analysis through workflow management systems

Dr. Paolo Romano, Gruppo di Bioinformatica, Istituto Nazionale per la Ricerca sul Cancro (IST), Genoa, Italy

Thursday May 27, 2010

• Seminar: microRNA Target Gene Prediction

Prof. Francesco Masulli, Facoltà di Scienze Matematiche Fisiche e Naturali, Università Degli Studi di Genova, Italy

Wednesday April 28, 2010

• Seminar: Approcci proteomici allo studio del tumore renale

Prof. Fulvio Magni, Dipartimento di Medicina Sperimentale, Facoltà di Medicina e Chirurgia, Università Degli Studi di Milano-Bicocca, Italy

Wednesday April 7, 2010

• Seminar: Misure di Bloat, Overfitting e Complessità Funzionale in Programmazione Genetica

Dott. Mauro Castelli, DISCo, University of Milano-Bicocca, Italy

Wednesday February 24, 2010

• Seminar: Bioinformatics for mass spectrometry-based proteomics analysis

Dr. Pierluigi Mauri, Istituto di Tecnologie Biomediche, CNR, Milan, Italy

Wednesday January 27, 2010

• Seminar: Membrane Systems Combining Variable Molecular Structures with Discretised Reaction Kinetics: From a Toy to a Tool in Systems Biology

Dr. Thomas Hinze, Department of Bioinformatics, School of Biology and Pharmacy, Friedrich-Schiller Universität Jena, Germany

Wednesday November 25, 2009

• Seminar: Conserved coexpression networks: a tool for functional genomics and disease gene prediction

Dott. Paolo Provero, Department of Genetics, Biology and Biochemistry, dell'Università di Torino.

Wednesday October 28, 2009

• Colloquium: Unconventional Models of Computation

Held in honor of Giancarlo Mauri, on the occasion of his 60th birthday.

September 28, 2009 - Politecnico di Milano, Cremona, Italy site.

• Workshop: Signs Symptoms and Findings 2009: Towards an Ontology for Clinical Phenotypes

Friday and Saturday September 4 and 5, 2009

• Seminar: Nanorobots in Medicine

Prof. Gianfranco Cerofolini, Dipartimento di Scienze dei Materiali, Università degli Studi di Milano-Bicocca, Milan, Italy

Wednesday June 24, 2009

• Seminar: Combining Structural Bioinformatics and Molecular Modelling to gain insight into protein function

Prof. Laura Bonati, Dipartimento di Scienze dell'Ambiente e del Territorio, Università degli Studi di Milano-Bicocca, Milan, Italy

Wednesday June 3, 2009

• Seminar: High Throughput Bioinformatics Challenges

Dott. Luciano Milanesi, Istituto di Tecnologie Biomediche, CNR, Milano

Wednesday April 29, 2009

• Seminar: Parameter Estimation for Stochastic Simulation: Applications to Bacterial Chemotaxis

Dr. Dario Pescini, Dipartimento di Informatica Sistemistica e Comunicazione, Università di Milano Bicocca

Wednesday March 25, 2009

• Seminar: Biclustering Algorithms for Biological Data Analysis

Dott. Ilaria Giordani, Dipartimento di Informatica Sistemistica e Comunicazione, Università di Milano Bicocca

Wednesday February 25, 2009

• Seminar: Stochastic Simulations with MESORD. Applications to Small Genetic Networks

Dott. Stefano De Pretis, Laboratorio di Modellistica Molecolare Dipartimento di Biotecnologie e Bioscienze Università di Milano Bicocca

Wednesday January 28, 2009